Fix for relative paths expected.

Provision/Config/Drupal/provision_drupal_settings.tpl.php

@@ -139,10 +139,10 @@ if (isset($_SERVER['db_name'])) {
   $drupal_hash_salt = '';
 <?php endif; ?>
 <?php if (isset($config_directories_active_var)): ?>
-  $config_directories['active'] = 'sites/<?php print $this->uri ?>/private/config/active';
+  $config_directories['active'] = 'private/config/active';
 <?php endif; ?>
 <?php if (isset($config_directories_staging_var)): ?>
-  $config_directories['staging'] = 'sites/<?php print $this->uri ?>/private/config/staging';
+  $config_directories['staging'] = 'private/config/staging';
 <?php endif; ?>
   $conf['clean_url'] = 1;
   $conf['aegir_api'] = <?php print !$this->backup_in_progress ? $this->api_version : 0 ?>;

platform/provision_drupal.drush.inc

@@ -233,14 +233,17 @@ function _provision_drupal_create_directories($url = NULL) {
     $chgrp["sites/$url/files/styles"]     = d('@server_master')->web_group;
 
     // d8 support
-    $mkdir["sites/$url/private/config"]   = 02770;
-    $chgrp["sites/$url/private/config"]   = d('@server_master')->web_group;
+    $mkdir["sites/$url/files/private"]    = 02770;
+    $chgrp["sites/$url/files/private"]    = d('@server_master')->web_group;
 
-    $mkdir["sites/$url/private/config/active"] = 02770;
-    $chgrp["sites/$url/private/config/active"] = d('@server_master')->web_group;
+    $mkdir["sites/$url/files/private/config"]   = 02770;
+    $chgrp["sites/$url/files/private/config"]   = d('@server_master')->web_group;
 
-    $mkdir["sites/$url/private/config/staging"] = 02770;
-    $chgrp["sites/$url/private/config/staging"] = d('@server_master')->web_group;
+    $mkdir["sites/$url/files/private/config/active"] = 02770;
+    $chgrp["sites/$url/files/private/config/active"] = d('@server_master')->web_group;
+
+    $mkdir["sites/$url/files/private/config/staging"] = 02770;
+    $chgrp["sites/$url/files/private/config/staging"] = d('@server_master')->web_group;
   }
 
   // These paths should not have recursive operations performed on them.
@@ -259,9 +262,10 @@ function _provision_drupal_create_directories($url = NULL) {
     "sites/$url/private/files",
     "sites/$url/private/temp",
     "sites/$url/files/styles",
-    "sites/$url/private/config",
-    "sites/$url/private/config/active",
-    "sites/$url/private/config/staging"
+    "sites/$url/files/private",
+    "sites/$url/files/private/config",
+    "sites/$url/files/private/config/active",
+    "sites/$url/files/private/config/staging"
   );
 
   // Allow other commands to add or alter the directories to be created.